Links
RNA secondary structure processing & visualization
- 3DNA/DSSR : Software for Defining the Secondary Structures of RNA
- BiBiServ : Bielefeld University Bioinformatics Server
- MC-Annotate : The RNA structure evaluator
- PseudoViewer : visualization of RNA pseudoknots of any type
- R-chie : plotting arc diagrams of RNA secondary structures
- RNAView : Secondary Structure Viewer
- VARNA : Visualization Applet for RNA
- Vienna RNA Package : RNA secondary structure analysis software
RNA secondary structure prediction
RNA structural databases
- NDB : The Nucleic Acid Database
- PDB : The RCSB Protein Data Bank
- RNA CoSSMos : A database of secondary structure motifs found in RNA 3D structures
- RNAJunction : A database of RNA junction and kissing loop structures
- RNA FRABASE 2.0 : RNA FRAgments search engine & dataBASE
- RNA STRAND : The RNA secondary structure and statistical analysis database
RNA tertiary structure prediction & analysis
- Assemble : A graphical tool to construct and study RNA architectures
- MC-Fold/MC-Sym : A web-hosted service for RNA secondary and tertiary structure prediction
- RNA2D3D : An interactive system for the conversion of RNA 2D structures to 3D and 3D modeling
- RNAComposer : A webserver for fully automated prediction of large RNA 3D structures
- RNAlyzer : A computational method for comparison of RNA 3D models with the reference structure
- RNAssess : A computational server for comparison of RNA 3D models with the reference structure and for discrimination between the correct and incorrect models